{"id":7021,"date":"2024-03-01T23:00:00","date_gmt":"2024-03-01T22:00:00","guid":{"rendered":"https:\/\/www.mio.osupytheas.fr\/fr\/lindexation-des-donnees-brutes-de-sequencage-pour-mieux-dechiffrer-le-vivant\/"},"modified":"2024-07-05T15:01:56","modified_gmt":"2024-07-05T13:01:56","slug":"indexing-raw-sequencing-data-to-better-decipher-living-organisms","status":"publish","type":"post","link":"https:\/\/www.mio.osupytheas.fr\/en\/lindexation-des-donnees-brutes-de-sequencage-pour-mieux-dechiffrer-le-vivant\/","title":{"rendered":"Indexing raw sequencing data to better decipher living organisms"},"content":{"rendered":"
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INSU Newsletter - Scientific results<\/strong><\/h4>\r\n

Major sequencing projects are fundamental to our understanding of living organisms in various fields (health, agronomy, ecology). Technological advances have made it possible to obtain a considerable amount of raw sequencing data (sequence reads). The European Nucleotide Archive currently contains almost 50 Petabytes of raw public data.<\/p>\r\n

A team of researchers from CNRS Terre & Univers (MIO-OSU Pyth\u00e9as), in collaboration with several research laboratories, has used k-mers (words of size k) to create a notion of word in the raw sequencing data. This indexing solution has made it possible to query several tens of terabytes of sequence data from the Tara Oceans project. The Ocean Read Atlas (ORA) public web server, developed for this purpose, can be used to directly query several datasets from the Tara Oceans consortium taken from all the world's oceans.<\/p>\r\n\r\n

More information<\/strong><\/a><\/h4>\r\n<\/div>\r\n<\/div>\r\n<\/div>\r\n<\/div>\r\n<\/div>\r\n<\/div>\r\n<\/div>\r\n<\/div>\r\n<\/div>","protected":false},"excerpt":{"rendered":"

Lettre de l’INSU – R\u00e9sultats scientifiques Les grands projets de s\u00e9quen\u00e7age sont fondamentaux pour mieux comprendre le vivant dans diff\u00e9rents domaines (sant\u00e9, agronomie, \u00e9cologie). Les avanc\u00e9es technologiques ont permis d’atteindre […]<\/p>\n","protected":false},"author":1,"featured_media":4489,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[1],"tags":[],"class_list":["post-7021","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-actualites"],"acf":[],"_links":{"self":[{"href":"https:\/\/www.mio.osupytheas.fr\/en\/wp-json\/wp\/v2\/posts\/7021","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.mio.osupytheas.fr\/en\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.mio.osupytheas.fr\/en\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.mio.osupytheas.fr\/en\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.mio.osupytheas.fr\/en\/wp-json\/wp\/v2\/comments?post=7021"}],"version-history":[{"count":1,"href":"https:\/\/www.mio.osupytheas.fr\/en\/wp-json\/wp\/v2\/posts\/7021\/revisions"}],"predecessor-version":[{"id":8023,"href":"https:\/\/www.mio.osupytheas.fr\/en\/wp-json\/wp\/v2\/posts\/7021\/revisions\/8023"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.mio.osupytheas.fr\/en\/wp-json\/wp\/v2\/media\/4489"}],"wp:attachment":[{"href":"https:\/\/www.mio.osupytheas.fr\/en\/wp-json\/wp\/v2\/media?parent=7021"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.mio.osupytheas.fr\/en\/wp-json\/wp\/v2\/categories?post=7021"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.mio.osupytheas.fr\/en\/wp-json\/wp\/v2\/tags?post=7021"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}