Pascal Hingamp

2022

• The Ocean Gene Atlas v2.0: online exploration of the biogeography and phylogeny of plankton genes

  Authors : Vernette Caroline, Lecubin Julien, Sánchez Pablo, Coordinators Tara Oceans, Sunagawa Shinichi, Delmont Tom O., Acinas Silvia, Pelletier Eric, Hingamp Pascal, Lescot Magali,
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2021

• Deep ocean metagenomes provide insight into the metabolic architecture of bathypelagic microbial communities

  Authors : Acinas Silvia, Sánchez Pablo, Salazar Guillem, Cornejo-Castillo Francisco, Sebastián Marta, Logares Ramiro, Royo-Llonch Marta, Paoli Lucas, Sunagawa Shinichi, Hingamp Pascal, Ogata Hiroyuki, Lima-Mendez Gipsi, Roux Simon, González José, Arrieta Jesús, Alam Intikhab, Kamau Allan, Bowler Chris, Raes Jeroen, Pesant Stéphane, Bork Peer, Agustí Susana, Gojobori Takashi, Vaqué Dolors, Sullivan Matthew, Pedrós-Alió Carlos, Massana Ramon, Duarte Carlos, Gasol Josep,
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• Macroscale patterns of oceanic zooplankton composition and size structure

  Authors : Brandão Manoela, Benedetti Fabio, Martini Séverine, Soviadan Yawouvi Dodji, Irisson Jean-Olivier, Romagnan Jean-Baptiste, Elineau Amanda, Desnos Corinne, Jalabert Laëtitia, Freire Andrea, Picheral Marc, Henry Nicolas, Acinas Silvia, Babin Marcel, Bork Peer, Boss Emmanuel, Bowler Chris, Cochrane Guy, de Vargas Colomban, Gorsky Gabriel, Guidi Lionel, Grimsley Nigel, Hingamp Pascal, Iudicone Daniele, Jaillon Olivier, Kandels Stefanie, Karp-Boss Lee, Karsenti Eric, Not Fabrice, Ogata Hiroyuki, Poulton Nicole, Pesant Stephane, Raes Jeroen, Sardet Christian, Speich Sabrina, Sullivan Matthew, Sunagawa Shinichi, Wincker Patrick, Stemmann Lars, Lombard Fabien,
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• Author Correction: Macroscale patterns of oceanic zooplankton composition and size structure

  Authors : Brandão Manoela, Benedetti Fabio, Martini Séverine, Soviadan Yawouvi Dodji, Irisson Jean-Olivier, Romagnan Jean-Baptiste, Elineau Amanda, Desnos Corinne, Jalabert Laëtitia, Freire Andrea, Picheral Marc, Guidi Lionel, Gorsky Gabriel, Bowler Chris, Karp-Boss Lee, Henry Nicolas, de Vargas Colomban, Sullivan Matthew, Acinas Silvia, Babin Marcel, Bork Peer, Boss Emmanuel, Cochrane Guy, Grimsley Nigel, Hingamp Pascal, Iudicone Daniele, Jaillon Olivier, Kandels Stefanie, Karsenti Eric, Not Fabrice, Ogata Hiroyuki, Poulton Nicole, Pesant Stephane, Raes Jeroen, Sardet Christian, Speich Sabrina, Stemmann Lars, Sunagawa Shinichi, Wincker Patrick, Lombard Fabien,
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• The Ocean Barcode Atlas: a web service to explore the biodiversity and biogeography of marine organisms.

  Authors : Vernette Caroline, Henry Nicolas, Lecubin Julien, de Vargas Colomban, Hingamp Pascal, Lescot Magali,
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2020

• Diversity and evolution of bacterial bioluminescence genes in the global ocean

  Authors : Vannier Thomas, Hingamp Pascal, Turrel Floriane, Tanet Lisa, Lescot Magali, Timsit Y.,
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2019

• Microbial abundance, activity and population genomic profiling with mOTUs2

  Authors : Milanese Alessio, Mende Daniel, Paoli Lucas, Salazar Guillem, Ruscheweyh Hans-Joachim, Cuenca Miguelangel, Hingamp Pascal, Alves Renato, Costea Paul, Coelho Luis Pedro, Schmidt Thomas, Almeida Alexandre, Mitchell Alex, Finn Robert, Huerta-Cepas Jaime, Bork Peer, Zeller Georg, Sunagawa Shinichi,
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• Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome

  Authors : Salazar Guillem, Paoli Lucas, Alberti Adriana A., Huerta-Cepas Jaime, Ruscheweyh Hans-Joachim, Cuenca Miguelangel, Field Christopher, Coelho Luis Pedro, Cruaud Corinne, Engelen Stefan, Gregory Ann, Labadie Karine, Marec Claudie, Pelletier Eric, Royo-Llonch Marta, Roux Simon, Sánchez Pablo, Uehara Hideya, Zayed Ahmed, Zeller Georg, Carmichael Margaux, Dimier Céline, Ferland Joannie, Kandels Stefanie, Picheral Marc, Pisarev Sergey, Poulain Julie, Acinas Silvia, Babin Marcel, Bork Peer, Boss Emmanuel, Bowler Chris, Cochrane Guy, de Vargas Colomban, Follows Michael, Gorsky Gabriel, Grimsley Nigel, Guidi Lionel, Hingamp Pascal, Iudicone Daniele, Jaillon Olivier, Kandels-Lewis Stefanie, Karp-Boss Lee, Karsenti Eric, Not Fabrice, Ogata Hiroyuki, Pesant Stephane, Poulton Nicole, Raes Jeroen, Sardet Christian, Speich Sabrina, Stemmann Lars, Sullivan Matthew, Sunagawa Shinichi, Wincker Patrick,
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• Marine DNA Viral Macro- and Microdiversity from Pole to Pole

  Authors : Gregory Ann, Zayed Ahmed, Conceição-Neto Nádia, Temperton Ben, Bolduc Ben, Alberti Adriana A., Ardyna Mathieu, Arkhipova Ksenia, Carmichael Margaux, Cruaud Corinne, Dimier Céline, Domínguez-Huerta Guillermo, Ferland Joannie, Kandels Stefanie, Liu Yunxiao, Marec Claudie, Picheral Marc, Pisarev Sergey, Poulain Julie, Tremblay Jean-Éric, Vik Dean, Bork Peer, Culley Alexander, Ogata Hiroyuki, Dutilh Bas E, Roux Simon, Acinas Silvia G., Babin Marcel, Boss Emmanuel, Bowler Chris, Cochrane Guy, de Vargas Colomban, Follows Michael, Gorsky Gabriel, Grimsley Nigel, Guidi Lionel, Hingamp Pascal, Iudicone Daniele, Jaillon Olivier, Kandels-Lewis Stefanie, Karp-Boss Lee, Karsenti Eric, Not Fabrice, Pesant Stéphane, Poulton Nicole, Raes Jeroen, Sardet Christian, Speich Sabrina, Stemmann Lars, Sullivan Matthew, Sunagawa Shinichi, Wincker Patrick,
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• Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

  Authors : Caputi Luigi, Carradec Quentin, Eveillard Damien, Kirilovsky Amos, Pelletier Eric, Pierella Karlusich Juan, Rocha Jimenez Vieira Fabio, Villar Emilie, Chaffron Samuel, Malviya Shruti, Scalco Eleonora, Acinas Silvia G, Alberti Adriana A., Aury Jean Marc, Benoiston Anne-Sophie, Bertrand Alexis, Biard Tristan, Bittner Lucie, Boccara Martine, Brum Jennifer R., Brunet Christophe, Busseni Greta, Carratalà Anna, Claustre Hervé, Coelho Luis Pedro, Colin Sébastien, d'Aniello Salvatore, da Silva Corinne, del Core Marianna, Doré Hugo, Gasparini Stéphane, Kokoszka Florian, Jamet Jean-Louis, Lejeusne Christophe D, Lepoivre Cyrille, Lescot Magali, Lima-Mendez Gipsi, Lombard Fabien, Lukeš Julius, Maillet Nicolas, Madoui Mohammed-Amin, Martinez Elodie, Mazzocchi Maria Grazia, Néou Mario B, Paz-Yepes Javier, Poulain Julie, Ramondenc Simon, Romagnan Jean-Baptiste, Roux Simon, Salvagio Manta Daniela, Sanges Remo, Speich Sabrina, Sprovieri Mario, Sunagawa Shinichi, Taillandier Vincent, Tanaka Atsuko, Tirichine Leila, Trottier Camille, Uitz Julia, Veluchamy Alaguraj, Veselá Jana, Vincent Flora, Yau Sheree, Kandels-Lewis Stefanie, Searson Sarah, Dimier Céline, Picheral Marc, Bork Peer, Boss Emmanuel, de Vargas Colomban, Follows Michael, Grimsley Nigel, Guidi Lionel, Hingamp Pascal, Karsenti Eric, Sordino Paolo, Stemmann Lars, Sullivan Matthew B., Tagliabue Alessandro, Zingone Adriana, Garczarek Laurence, d'Ortenzio Fabrizio, Testor Pierre, Not Fabrice, d'Alcalà Maurizio Ribera, Wincker Patrick, Bowler Chris, Iudicone Daniele, Gorsky Gabriel, Jaillon Olivier, Karp-Boss Lee, Krzic Uros, Ogata Hiroyuki, Pesant Stéphane, Raes Jeroen, Reynaud Emmanuel G, Sardet Christian, Sieracki Mike, Velayoudon Didier, Weissenbach Jean,
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• Minimum Information about an Uncultivated Virus Genome (MIUViG)

  Authors : Roux Simon, Adriaenssens Evelien M., Dutilh Bas E., Koonin Eugene V., Kropinski Andrew M., Krupovic Mart, Kuhn Jens H., Lavigne Rob, Brister J. Rodney, Varsani Arvind, Amid Clara, Aziz Ramy K., Bordenstein Seth R., Bork Peer, Breitbart Mya, Cochrane Guy R., Daly Rebecca A., Desnues Christelle, Duhaime Melissa B., Emerson Joanne B., Enault François, Fuhrman Jed A., Hingamp Pascal, Hugenholtz Philip, Hurwitz Bonnie L., Ivanova Natalia N., Labonté Jessica M., Lee Kyung-Bum, Malmstrom Rex R., Martinez-Garcia Manuel, Mizrachi Ilene Karsch, Ogata Hiroyuki, Páez-Espino David, Petit Marie-Agnès, Putonti Catherine, Rattei Thomas, Reyes Alejandro, Rodriguez-Valera Francisco, Rosario Karyna, Schriml Lynn, Schulz Frederik, Steward Grieg F., Sullivan Matthew B., Sunagawa Shinichi, Suttle Curtis A., Temperton Ben, Tringe Susannah G., Thurber Rebecca Vega, Webster Nicole S., Whiteson Katrine L., Wilhelm Steven W., Wommack K. Eric, Woyke Tanja, Wrighton Kelly C., Yilmaz Pelin, Yoshida Takashi, Young Mark J., Yutin Natalya, Allen Lisa Zeigler, Kyrpides Nikos C., Eloe-Fadrosh Emiley A.,
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2018

• Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

  Authors : Seeleuthner Yoann, Mondy Samuel, Lombard Vincent, Carradec Quentin, Pelletier Eric, Wessner Marc, Leconte Jade, Mangot Jean-François, Poulain Julie, Labadie Karine, Logares Ramiro, Sunagawa Shinichi, de Berardinis Véronique, Salanoubat Marcel, Dimier Céline, Kandels-Lewis Stefanie, Picheral Marc, Searson Sarah, Pesant Stéphane, Poulton Nicole, Stepanauskas Ramunas, Bork Peer, Bowler Chris, Hingamp Pascal, Sullivan Matthew B., Iudicone Daniele, Massana Ramon, Aury Jean-Marc, Henrissat Bernard, Karsenti Eric, Jaillon Olivier, Sieracki Mike, de Vargas Colomban, Wincker Patrick, Acinas Silvia G., Boss Emmanuel, Follows Michael, Gorsky Gabriel, Grimsley Nigel, Karp-Boss Lee, Krzic Uros, Not Fabrice, Raes Jeroen, Reynaud Emmanuel G., Sardet Christian, Speich Sabrina, Stemmann Lars, Weissenbach Jean, Velayoudon Didier,
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• A global ocean atlas of eukaryotic genes

  Authors : Carradec Quentin, Pelletier Eric, da Silva Corinne, Alberti Adriana A., Seeleuthner Yoann, Blanc-Mathieu Romain, Lima-Mendez Gipsi, Rocha Fabio, Tirichine Leila, Labadie Karine, Kirilovsky Amos, Bertrand Alexis, Engelen Stefan, Madoui Mohammed-Amin, Méheust Raphaël, Poulain Julie, Romac Sarah, Richter Daniel, Yoshikawa Genki, Dimier Céline, Kandels-Lewis Stefanie, Picheral Marc, Searson Sarah, Jaillon Olivier, Aury Jean-Marc, Karsenti Eric, Sullivan Matthew, Sunagawa Shinichi, Bork Peer, Not Fabrice, Hingamp Pascal, Raes Jeroen J., Guidi Lionel, Ogata Hiroyuki, de Vargas Colomban, Iudicone Daniele, Bowler Chris, Wincker Patrick, Weissenbach Jean,
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• Degenerate PCR Primers to Reveal the Diversity of Giant Viruses in Coastal Waters

  Authors : Li Yanze, Hingamp Pascal, Watai Hiroyasu, Endo Hisashi, Yoshida Takashi, Ogata Hiroyuki,
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• Locality and diel cycling of viral production revealed by a 24 h time course cross-omics analysis in a coastal region of Japan

  Authors : Yoshida Takashi, Nishimura Yosuke, Watai Hiroyasu, Haruki Nana, Morimoto Daichi, Kaneko Hiroto, Honda Takashi, Yamamoto Keigo, Hingamp Pascal, Sako Yoshihiko, Goto Susumu, Ogata Hiroyuki,
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• The Ocean Gene Atlas: exploring the biogeography of plankton genes online

  Authors : Villar Emilie, Vannier Thomas, Vernette Caroline, Lescot Magali, Cuenca Miguelangel, Alexandre Aurélien, Bachelerie Paul, Rosnet Thomas, Pelletier Eric, Sunagawa Shinichi, Hingamp Pascal,
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• Taxon Richness of “Megaviridae” Exceeds those of Bacteria and Archaea in the Ocean

  Authors : Mihara Tomoko, Koyano Hitoshi, Hingamp Pascal, Grimsley Nigel, Goto Susumu, Ogata Hiroyuki,
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2017

• Viral to metazoan marine plankton nucleotide sequences from the Tara Oceans expedition

  Authors : Alberti Adriana A., Poulain Julie, Engelen Stefan, Labadie Karine, Romac Sarah, Ferrera Isabel, Albini Guillaume, Aury Jean-Marc, Belser Caroline, Bertrand Alexis, Cruaud Corinne, da Silva Corinne, Dossat Carole, Gavory Frédérick F., Gas Shahinaz, Guy Guy, Haquelle Maud, Jacoby E'Krame, Jaillon Olivier, Lemainque Arnaud, Pelletier Eric, Samson Gaëlle, Wessner Mark, Bazire Pascal, Beluche Odette, Bertrand Laurie, Besnard-Gonnet Marielle, Bordelais Isabelle, Boutard Magali, Dubois Maria, Dumont Corinne, Ettedgui Evelyne, Fernandez Patricia, Garcia Espérance, Aiach Nathalie, Guerin Thomas, Hamon Chadia, Brun Élodie, Lebled Sandrine, Lenoble Patricia, Louesse Claudine, Mahieu Eric, Mairey Barbara, Martins Nathalie, Megret Catherine, Milani Claire, Muanga Jacqueline, Orvain Céline, Payen Emilie, Perroud Peggy, Petit Emmanuel, Robert Dominique, Ronsin Murielle, Vacherie Benoit, Acinas Silvia G., Royo-Llonch Marta, Cornejo-Castillo Francisco, Logares Ramiro, Fernández-Gómez Beatriz, Bowler Chris, Cochrane Guy, Amid Clara, Hoopen Petra Ten, de Vargas Colomban, Grimsley Nigel, Desgranges Elodie, Kandels-Lewis Stefanie, Ogata Hiroyuki, Poulton Nicole, Sieracki Michael E., Stepanauskas Ramunas, Sullivan Matthew, Brum Jennifer, Duhaime Melissa, Poulos Bonnie, Hurwitz Bonnie, Bork Peer, Boss Emmanuel, Follows Michael, Gorsky Gabriel, Hingamp Pascal, Iudicone Daniele, Karp-Boss Lee, Karsenti Eric, Not Fabrice, Pesant Stéphane, Raes Jeroen, Sardet Christian, Speich Sabrina, Stemmann Lars, Sunagawa Shinichi, Wincker Patrick,
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• Environmental Viral Genomes Shed New Light on Virus-Host Interactions in the Ocean

  Authors : Nishimura Yosuke, Watai Hiroyasu, Honda Takashi, Mihara Tomoko, Omae Kimiho, Roux Simon, Blanc-Mathieu Romain, Yamamoto Keigo, Hingamp Pascal, Sako Yoshihiko, Sullivan Matthew, Goto Susumu, Ogata Hiroyuki, Yoshida Takashi,
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2016

• Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

  Authors : Lescot Magali, Hingamp Pascal, Kojima Kenji, Villar Emilie, Romac Sarah, Veluchamy Alaguraj, Boccara Martine, Jaillon Olivier, Iudicone Daniele, Bowler Chris, Wincker Patrick, Claverie Jean-Michel, Ogata Hiroyuki,
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• Linking Virus Genomes with Host Taxonomy.

  Authors : Mihara Tomoko, Nishimura Yosuke, Shimizu Yugo, Nishiyama Hiroki, Yoshikawa Genki, Uehara Hideya, Hingamp Pascal, Goto Susumu, Ogata Hiroyuki,
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• Plankton networks driving carbon export in the oligotrophic ocean

  Authors : Guidi Lionel, Chaffron Samuel, Bittner Lucie, Eveillard Damien, Larhlimi Abdelhalim, Roux Simon, Darzi Youssef, Audic Stéphane, Berline L., Brum Jennifer R., Coelho Luis Pedro, Espinoza Julio Cesar Ignacio, Malviya Shruti, Sunagawa Shinichi, Dimier Céline, Kandels-Lewis Stefanie, Picheral Marc, Poulain Julie, Searson Sarah, Stemmann Lars, Not Fabrice, Hingamp Pascal, Speich Sabrina, Follows Mick, Karp-Boss Lee, Boss Emmanuel, Ogata Hiroyuki, Pesant Stephane, Weissenbach Jean, Wincker Patrick, Acinas Silvia G., Bork Peer, Iudicone Daniele, Sullivan Matthew B., Raes Jeroen, Karsenti Eric, Bowler Chris, Gorsky Gabriel,
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• Cyanobacterial symbionts diverged in the late Cretaceous towards lineage-specific nitrogen fixation factories in single-celled phytoplankton

  Authors : Cornejo-Castillo Francisco M., Cabello Ana M., Salazar Guillem, Sánchez-Baracaldo Patricia, Lima-Mendez Gipsi, Hingamp Pascal, Alberti Adriana A., Sunagawa Shinichi, Bork Peer, de Vargas Colomban, Raes Jeroen, Bowler Chris, Wincker Patrick, Zehr Jonathan P., Gasol Josep M., Massana Ramon, Acinas Silvia G.,
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2015

• Deep sequencing of amplified Prasinovirus and host green algal genes from an Indian Ocean transect reveals interacting trophic dependencies and new genotypes

  Authors : Clerissi Camille, Desdevises Yves, Romac Sarah, Audic Stéphane, de Vargas Colomban, Acinas Silvia G, Casotti Raffaela, Poulain Julie, Wincker Patrick, Hingamp Pascal, Ogata Hiroyuki, Grimsley Nigel,
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• Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages

  Authors : Lescot Magali, Hingamp Pascal, Kojima Kenji K, Villar Emilie, Romac Sarah, Veluchamy Alaguraj, Boccara Martine, Jaillon Olivier, Iudicone Daniele, Bowler Chris, Wincker Patrick, Claverie Jean-Michel, Ogata Hiroyuki,
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• Environmental characteristics of Agulhas rings affect interocean plankton transport

  Authors : Villar Emilie, Farrant Gregory, Follows Michael, Garczarek Laurence, Speich Sabrina, Audic Stéphane, Bittner Lucie, Blanke Bruno, Brum Jennifer R., Brunet Christophe, Casotti Raffaella, Chase Alison, Dolan John R., d'Ortenzio F., Gattuso Jean-Pierre, Grima N., Guidi Lionel, Hill Christopher N., Jahn Olivier, Jamet Jean-Louis, Le Goff Hervé, Lepoivre Cyrille, Malviya Shruti, Pelletier Éric, Romagnan Jean-Baptiste, Roux S., Santini Sébastien, Scalco Eleonora, Schwenck Sarah M., Testor Pierre, Tanaka Atsuko, Vannier Thomas, Vincent Flora, Zingone Adriana, Dimier Céline, Picheral Marc, Searson Sarah, Kandels-Lewis Stefanie, Acinas Silvia, Bork Peer, Boss Emmanuel, de Vargas Colomban, Gorsky Gabriel, Ogata Hiroyuki, Pesant Stephan, Sullivan Matthew, Sunagawa Shinichi, Wincker Patrick, Karsenti Eric, Bowler Chris, Not Fabrice, Hingamp P., Iudicone Daniele,
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• Patterns and ecological drivers of ocean viral communities

  Authors : Brum Jennifer, Ignacio-Espinoza J Cesar, Roux Simon, Doulcier Guilhem, Acinas Silvia G., Alberti Adriana A., Chaffron Samuel, Cruaud Corinne, de Vargas Colomban, Gasol Josep, Gorsky Gabriel, Gregory Ann, Guidi Lionel, Hingamp Pascal, Iudicone Daniele, Not Fabrice, Ogata Hiroyuki, Pesant Stéphane, Poulos Bonnie, Schwenck Sarah, Speich Sabrina, Dimier Céline, Kandels-Lewis Stefanie, Picheral Marc, Searson Sarah, Bork Peer, Bowler Chris, Sunagawa Shinichi, Wincker Patrick, Karsenti Eric, Sullivan Matthew, Ignacio-Espinoza C., Gasol M., Gregory C., Schwenck M.,
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• Structure and function of the global ocean microbiome

  Authors : Sunagawa Shinichi, Coelho Luis Pedro, Chaffron Samuel, Kultima Jens Roat, Labadie Karine, Salazar Guillem, Djahanschiri Bardya, Zeller Georg, Mende Daniel R., Alberti Adriana A., Cornejo-Castillo Francisco M., Costea Paul I., Cruaud Corinne, d'Ovidio Francesco, Engelen Stefan, Ferrera Isabel, Gasol Josep M., Guidi Lionel, Hildebrand Falk, Kokoszka Florian, Lepoivre Cyrille, Lima-Mendez Gipsi, Poulain Julie, Poulos Bonnie T., Royo-Llonch Marta, Sarmento Hugo, Vieira-Silva Sara, Dimier Céline, Picheral Marc, Searson Sarah, Kandels-Lewis Stefanie, Tara Oceans Coordinators (team), Bowler Chris, de Vargas Colomban, Gorsky Gabriel, Grimsley Nigel, Hingamp Pascal, Iudicone Daniele, Jaillon Olivier, Not Fabrice, Ogata Hiroyuki, Pesant Stéphane, Speich Sabrina, Stemmann Lars, Sullivan Matthew B., Weissenbach Jean, Wincker Patrick, Karsenti Eric, Raes Jeroen, Acinas Silvia G., Bork Peer,
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• Open science resources for the discovery and analysis of Tara Oceans data

  Authors : Pesant Stéphane, Not Fabrice, Picheral Marc, Kandels-Lewis Stefanie, Le Bescot Noan, Gorsky Gabriel, Iudicone Daniele, Karsenti Eric, Speich Sabrina, Troublé Romain, Dimier Céline, Searson Sarah, Acinas Silvia G., Bork Peer, Boss Emmanuel, Bowler Chris, de Vargas Colomban, Follows Michael, Grimsley Nigel, Hingamp Pascal, Jaillon Olivier, Karp-Boss Lee, Krzic Uros, Ogata Hiroyuki, Raes Jeroen, Reynaud Emmanuel G., Sardet Christian, Sieracki Mike, Stemmann Lars, Sullivan Matthew B., Sunagawa Shinichi, Velayoudon Didier, Weissenbach Jean, Wincker Patrick,
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• Eukaryotic plankton diversity in the sunlit ocean

  Authors : Le Bescot Noan, Probert Ian, Carmichael Margaux, Poulain Julie, Romac Sarah, Colin Sebastien, Aury Jean-Marc, Bittner Lucie, Chaffron Samuel, Dunthorn Micah, Engelen Stefan, Flegontova Olga, Guidi Lionel, Horák Ales, Jaillon Olivier, Lima-Mendez Gipsi, Lukes Julius, Malviya Shruti, Morard Raphaël, Mulot Matthieu, Scalco Eleonora, Siano Raffaele, Vincent Flora, Zingone Adriana, Dimier Celine, Picheral Marc, Searson Sarah, Kandels-Lewis Stefanie, Acinas Silvia G., Bork Peer, Bowler Chris, Gorsky Gabriel, Grimsley Nigel, Hingamp Pascal, Iudicone Daniele, Not Fabrice, Ogata Hiroyuki, Pesant Stephane, Raes Jeroen, Sieracki Michael E., Speich Sabrina, Stemmann Lars, Sunagawa Shinichi, Weissenbach Jean, Wincker Patrick, Karsenti Eric, Coordinators Tara Oceans, Audic Stéphane, Henry Nicolas, Decelle Johan, Mahé Frédéric, Logares Ramiro, Lara Enrique, Berney Cédric,
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2014

• QDD version 3.1: a user-friendly computer program for microsatellite selection and primer design revisited: experimental validation of variables determining genotyping success rate

  Authors : Meglécz Emese, Pech Nicolas, Gilles André, Dubut Vincent, Hingamp Pascal, Trilles Aurélie, Grenier Rémi, Martin Jean-François,
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• Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

  Authors : Logares Ramiro, Sunagawa Shinichi, Salazar Guillem, Cornejo-Castillo Francisco M., Ferrera Isabel, Sarmento Hugo, Hingamp Pascal, Ogata Hiroyuki, de Vargas Colomban, Lima-Mendez Gipsi, Raes Jeroen, Poulain Julie, Jaillon Olivier, Wincker Patrick, Kandels-Lewis Stefanie, Karsenti Eric, Bork Peer, Acinas Silvia G.,
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2013

• Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes

  Authors : Hingamp Pascal, Grimsley Nigel, Acinas Silvia G, Clerissi Camille, Subirana Lucie, Poulain Julie, Ferrera Isabel, Sarmento Hugo, Villar Emilie, Lima-Mendez Gipsi, Faust Karoline, Sunagawa Shinichi, Claverie Jean-Michel, Moreau Hervé, Desdevises Yves, Bork Peer, Raes Jeroen, de Vargas Colomban, Karsenti Eric, Kandels-Lewis Stefanie, Jaillon Olivier, Not Fabrice, Pesant Stéphane, Wincker Patrick, Ogata Hiroyuki,
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2011

• A Holistic Approach to Marine Eco-Systems Biology

  Authors : Karsenti Eric, Acinas Silvia G., Bork Peer, Bowler Chris, de Vargas Colomban, Raes Jeroen, Sullivan Matthew, Arendt Detlev, Benzoni Francesca, Claverie Jean-Michel, Follows Mick, Gorsky Gaby, Hingamp Pascal, Iudicone Daniele, Jaillon Olivier, Kandels-Lewis Stefanie, Krzic Uros, Not Fabrice, Ogata Hiroyuki, Pesant Stéphane, Reynaud Emmanuel Georges, Sardet Christian, Sieracki Michael E., Speich Sabrina, Velayoudon Didier, Weissenbach Jean, Wincker Patrick,
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2008

• Metagenome Annotation Using a Distributed Grid of Undergraduate Students

  Authors : Hingamp P., Brochier-Armanet Céline, Talla E., Gautheret D., Thieffry D., Herrmann C.,
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2004

• Feature extraction and signal processing for nylon DNA microarrays.

  Authors : Lopez Fabrice, Rougemont Jacques, Loriod Béatrice, Bourgeois Aude, Loï Laurence, Bertucci François, Hingamp Pascal, Houlgatte Rémi, Granjeaud Samuel,
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2003

• DNA microarray data and contextual analysis of correlation graphs.

  Authors : Rougemont Jacques, Hingamp Pascal,
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2002

• Prognosis of breast cancer and gene expression profiling using DNA arrays

  Authors : Bertucci F, Houlgatte R, Granjeaud S, Nasser V, Loriod Béatrice B., Beaudoing E, Hingamp P., Jacquemier J, Viens P, Birnbaum D, Nguyen C,
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• EMBL-Align: a new public nucleotide and amino acid multiple sequence alignment database

  Authors : Lombard V., Camon E.B., Parkinson H.E., Hingamp P., Stoesser G., Redaschi N.,
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2000

• Divergent N-terminal sequences target an inducible testis deubiquitinating enzyme to distinct subcellular structures.

  Authors : Lin L., Keriel Anne, Morales C., Bedard N, Zhao Q., Hingamp P., Lefrançois S, Combaret L, Wing S.,
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• Divergent N-terminal sequences target an inducible testis deubiquitinating enzyme to distinct subcellular structures

  Authors : Lin H., Keriel A., Morales C.R., Bedard N., Zhao Q., Hingamp Pascal, Combaret Lydie, Wing S.S.,
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