{"id":7021,"date":"2024-03-01T23:00:00","date_gmt":"2024-03-01T22:00:00","guid":{"rendered":"https:\/\/www.mio.osupytheas.fr\/fr\/lindexation-des-donnees-brutes-de-sequencage-pour-mieux-dechiffrer-le-vivant\/"},"modified":"2024-07-05T15:01:56","modified_gmt":"2024-07-05T13:01:56","slug":"lindexation-des-donnees-brutes-de-sequencage-pour-mieux-dechiffrer-le-vivant","status":"publish","type":"post","link":"https:\/\/www.mio.osupytheas.fr\/fr\/lindexation-des-donnees-brutes-de-sequencage-pour-mieux-dechiffrer-le-vivant\/","title":{"rendered":"L&#8217;indexation des donn\u00e9es brutes de s\u00e9quen\u00e7age pour mieux d\u00e9chiffrer le vivant"},"content":{"rendered":"<div id=\"basic-page-content\" class=\"page-content\">\r\n<div class=\"content\">\r\n<div class=\"container\">\r\n<div class=\"row\">\r\n<div class=\"col-xs-12\">\r\n<div class=\"container clearfix\">\r\n<div class=\"row\">\r\n<div class=\"col-xs-12\"><\/div>\r\n<\/div>\r\n<\/div>\r\n<div class=\"body\">\r\n<div class=\"field field-name-body field-type-text-with-summary field-label-hidden\">\r\n<div class=\"field-items\">\r\n<div class=\"field-item even\">\r\n<h4 class=\"rtejustify\"><strong>Lettre de l&#8217;INSU &#8211; R\u00e9sultats scientifiques<\/strong><\/h4>\r\n<p class=\"rtejustify\">Les grands projets de s\u00e9quen\u00e7age sont fondamentaux pour mieux comprendre le vivant dans diff\u00e9rents domaines (sant\u00e9, agronomie, \u00e9cologie). Les avanc\u00e9es technologiques ont permis d&#8217;atteindre une taille consid\u00e9rable de donn\u00e9es brutes de s\u00e9quen\u00e7age (lectures de s\u00e9quences). Le service europ\u00e9en \u00ab European Nucleotide Archive \u00bb contient actuellement pr\u00e8s de 50 Petaoctets de donn\u00e9es brutes publiques.<\/p>\r\n<p class=\"rtejustify\">Une \u00e9quipe de chercheurs du CNRS Terre &amp; Univers (MIO-OSU Pyth\u00e9as), en collaboration avec plusieurs laboratoires de recherche, a utilis\u00e9 des k-mers (mots de taille k) pour cr\u00e9er une notion de mot dans les donn\u00e9es brutes de s\u00e9quen\u00e7age. Cette solution d&#8217;indexation a ainsi permis d&#8217;interroger plusieurs dizaines de t\u00e9raoctets de donn\u00e9es de s\u00e9quence issues du projet Tara Oceans. Le serveur web public Ocean Read Atlas (ORA), d\u00e9velopp\u00e9 pour ce propos, permet d&#8217;interroger directement plusieurs jeux de donn\u00e9es du consortium Tara Oceans pr\u00e9lev\u00e9s sur tous les oc\u00e9ans du globe.<\/p>\r\n\r\n<h4 class=\"rtejustify\"><a href=\"https:\/\/www.insu.cnrs.fr\/fr\/cnrsinfo\/lindexation-des-donnees-brutes-de-sequencage-pour-mieux-dechiffrer-le-vivant\" target=\"_blank\" rel=\"noopener\"><strong>En savoir plus<\/strong><\/a><\/h4>\r\n<\/div>\r\n<\/div>\r\n<\/div>\r\n<\/div>\r\n<\/div>\r\n<\/div>\r\n<\/div>\r\n<\/div>\r\n<\/div>","protected":false},"excerpt":{"rendered":"<p>Lettre de l&#8217;INSU &#8211; R\u00e9sultats scientifiques Les grands projets de s\u00e9quen\u00e7age sont fondamentaux pour mieux comprendre le vivant dans diff\u00e9rents domaines (sant\u00e9, agronomie, \u00e9cologie). Les avanc\u00e9es technologiques ont permis d&#8217;atteindre [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":4489,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_acf_changed":false,"footnotes":""},"categories":[1],"tags":[],"class_list":["post-7021","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-actualites"],"acf":[],"_links":{"self":[{"href":"https:\/\/www.mio.osupytheas.fr\/fr\/wp-json\/wp\/v2\/posts\/7021","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.mio.osupytheas.fr\/fr\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.mio.osupytheas.fr\/fr\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.mio.osupytheas.fr\/fr\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.mio.osupytheas.fr\/fr\/wp-json\/wp\/v2\/comments?post=7021"}],"version-history":[{"count":1,"href":"https:\/\/www.mio.osupytheas.fr\/fr\/wp-json\/wp\/v2\/posts\/7021\/revisions"}],"predecessor-version":[{"id":8023,"href":"https:\/\/www.mio.osupytheas.fr\/fr\/wp-json\/wp\/v2\/posts\/7021\/revisions\/8023"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.mio.osupytheas.fr\/fr\/wp-json\/wp\/v2\/media\/4489"}],"wp:attachment":[{"href":"https:\/\/www.mio.osupytheas.fr\/fr\/wp-json\/wp\/v2\/media?parent=7021"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.mio.osupytheas.fr\/fr\/wp-json\/wp\/v2\/categories?post=7021"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.mio.osupytheas.fr\/fr\/wp-json\/wp\/v2\/tags?post=7021"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}